species:   Scscl
pid:       PID1644
parent:    Ssc-milR-120
paralog:   
locus:     NW_001820812.1:92262-92321
matures:   ['AAUAAACUUGAUCUAAUCUGACA', 'GGAUUUGAUCAUCUAGUAUUGA']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820812.1:92262-92321

3 out of bounds
14 alignments
14 proper strand
13 stranded perfect matches

************************            ************************
GAAUAAACUUGAUCUAAUCUGACAAUAUCUUUAAGUUGGGAUUUGAUCAUCUAGUAUUGA
.((((....(((((.(((((..((((........))))))))).))))).....))))..
-AAUAAACUUGAUCUAAUCUGACA------------------------------------ l=23 a=7 c
--------------------------------------GGAUUUGAUCAUCUAGUAUUGA l=22 a=0 c*
-AAUAAACUUGAUCUAAUCUGACA------------------------------------ l=23 a=7 ma
--------------------------------------GGAUUUGAUCAUCUAGUAUUGA l=22 a=0 ma*

GAAUAAACUUGAUCUAAUCUGACA------------------------------------ l=24 a=2 
-AAUAAACUUGAUCUAAUCUGACA------------------------------------ l=23 a=7 (c,ma)
---UAAACUUGAUCUAAUCUGACA------------------------------------ l=21 a=3 
-------CUUGAUCUAAUCUGACA------------------------------------ l=17 a=1 
--------------------GACAAUAUCUUUAAGUUGGGAUUc---------------- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101110
fn-111
